HTLV1 Target gene Detail Information

> COLEC12 Gene Search Result


Gene Information
Gene Name COLEC12
Gene ID 81035
Gene Full Name collectin subfamily member 12
Gene Alias CLP1|NSR2|SCARA4|SRCL
Transcripts ENSG00000158270
Virus HTLV1
Gene Type protein-coding
HPA Location Info Golgi apparatus, Vesicles;Cell Junctions;
Membrane Info Predicted membrane proteins
Uniport_ID Q5KU26
HGNC ID HGNC:16016
OMIM ID 607621
Summary This gene encodes a member of the C-lectin family, proteins that possess collagen-like sequences and carbohydrate recognition domains. This protein is a scavenger receptor that displays several functions associated with host defense. It can bind to carbohydrate antigens on microorganisms, facilitating their recognition and removal. It also mediates the recognition, internalization, and degradation of oxidatively modified low density lipoprotein by vascular endothelial cells. [provided by RefSeq, May 2018]
Target gene [COLEC12] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6003060 chr18 181 3 2 186 View
6007083 chr18 17 26 17 60 View
6019910 chr18 6 1 0 7 View

Target gene [COLEC12] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - COLEC12 peak across samples

Peak Plot