HTLV1 Target gene Detail Information

> CSGALNACT1 Gene Search Result


Gene Information
Gene Name CSGALNACT1
Gene ID 55790
Gene Full Name chondroitin sulfate N-acetylgalactosaminyltransferase 1
Gene Alias CSGalNAcT-1|ChGn|ChGn-1|SDJLABA|beta4GalNAcT
Transcripts ENSG00000147408
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;Golgi apparatus;
Membrane Info Disease related genes, Enzymes, Human disease related genes, Metabolic proteins, Potential drug targets, Predicted intracellular proteins
Uniport_ID Q8TDX6
HGNC ID HGNC:24290
OMIM ID 616615
Summary This gene encodes an enzyme that transfers N-acetylglucosamine (GalNAc) to the core tetrasaccharide linker and to elongating chondroitin sulfate chains in proteoglycans. Knockout of the orthologous mouse gene indicates that the protein is necessary for normal cartilage development and aggrecan metabolism. Mutations in this gene are associated with multiple sclerosis progression, and with mild skeletal dysplasia and joint laxity. [provided by RefSeq, Aug 2017]
Target gene [CSGALNACT1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004169 chr8 60 6 60 126 View
6016493 chr8 10 2 0 12 View
6021492 chr8 1 5 0 6 View
6027734 chr8 1 0 1 2 View

Target gene [CSGALNACT1] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - CSGALNACT1 peak across samples

Peak Plot