HTLV1 Target gene Detail Information

> DSCAM Gene Search Result


Gene Information
Gene Name DSCAM
Gene ID 1826
Gene Full Name DS cell adhesion molecule
Gene Alias CHD2|CHD2-42|CHD2-52
Transcripts ENSG00000171587
Virus HTLV1
Gene Type protein-coding
HPA Location Info Golgi apparatus;Cytosol;Intracellular and membrane;
Membrane Info Plasma proteins, Predicted membrane proteins
Uniport_ID O60469
HGNC ID HGNC:3039
OMIM ID 602523
Summary This gene is a member of the immunoglobulin superfamily of cell adhesion molecules (Ig-CAMs), and is involved in human central and peripheral nervous system development. This gene is a candidate for Down syndrome and congenital heart disease (DSCHD). A gene encoding a similar Ig-CAM protein is located on chromosome 11. Alternatively spliced transcript variants encoding multiple isoforms have been observed for this gene. [provided by RefSeq, Oct 2012]
Target gene [DSCAM] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6005447 chr21 21 10 56 87 View
6008488 chr21 45 0 0 45 View
6012404 chr21 15 7 0 22 View
6012405 chr21 15 7 0 22 View
6013025 chr21 17 3 0 20 View
6013623 chr21 14 4 0 18 View
6015869 chr21 13 0 0 13 View
6023933 chr21 2 2 0 4 View
6026468 chr21 2 0 0 2 View
6027082 chr21 2 0 0 2 View
6028304 chr21 1 0 0 1 View
6028409 chr21 0 1 0 1 View
6029855 chr21 1 0 0 1 View
6030856 chr21 0 0 0 0 View
6030867 chr21 0 0 0 0 View
6031788 chr21 0 0 0 0 View
6033389 chr21 0 0 0 0 View

Target gene [DSCAM] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - DSCAM peak across samples

Peak Plot