HTLV1 Target gene Detail Information

> ERVFRD-1 Gene Search Result


Gene Information
Gene Name ERVFRD-1
Gene ID 405754
Gene Full Name endogenous retrovirus group FRD member 1, envelope
Gene Alias ERVFRDE1|GLLL6191|HERV-FRD|HERV-W/FRD|UNQ6191|envFRD
Transcripts ENSG00000244476
Virus HTLV1
Gene Type protein-coding
HPA Location Info Plasma membrane, Actin filaments;Nucleoplasm, Cytosol;
Membrane Info Predicted membrane proteins, Transporters
Uniport_ID P60508
HGNC ID HGNC:33823
OMIM ID 610524
Summary Many different human endogenous retrovirus (HERV) families are expressed in normal placental tissue at high levels, suggesting that HERVs are functionally important in reproduction. This gene is part of a human endogenous retrovirus provirus on chromosome 6 that has inactivating mutations in the gag and pol genes. This gene is the envelope glycoprotein gene which appears to have been selectively preserved. The gene's protein product plays a major role in placental development and trophoblast fusion. The protein has the characteristics of a typical retroviral envelope protein, including a cleavage site that separates the surface (SU) and transmembrane (TM) proteins which form a heterodimer. [provided by RefSeq, Jun 2012]
Target gene [ERVFRD-1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6009157 chr6 34 5 0 39 View

Target gene [ERVFRD-1] related to Omics data
Data ID Experiment type Sample number Platform
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - ERVFRD-1 peak across samples

Peak Plot