HTLV1 Target gene Detail Information

> GAP43 Gene Search Result


Gene Information
Gene Name GAP43
Gene ID 2596
Gene Full Name growth associated protein 43
Gene Alias B-50|GAP-43|PP46
Transcripts ENSG00000172020
Virus HTLV1
Gene Type protein-coding
HPA Location Info Plasma membrane;
Membrane Info Plasma proteins, Predicted intracellular proteins, Transporters
Uniport_ID P17677
HGNC ID HGNC:4140
OMIM ID 162060
Summary The protein encoded by this gene has been termed a 'growth' or 'plasticity' protein because it is expressed at high levels in neuronal growth cones during development and axonal regeneration. This protein is considered a crucial component of an effective regenerative response in the nervous system. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
Target gene [GAP43] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6030383 chr3 0 0 0 0 View
6030428 chr3 0 0 0 0 View

Target gene [GAP43] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - GAP43 peak across samples

Peak Plot