HBV Target gene Detail Information

> GCNT1 Gene Search Result


Gene Information
Gene Name GCNT1
Gene ID 2650
Gene Full Name glucosaminyl (N-acetyl) transferase 1
Gene Alias C2GNT|C2GNT-L|C2GNT1|C2GlcNAcT|G6NT|NACGT2|NAGCT2
Transcripts ENSG00000187210
Virus HBV
Gene Type protein-coding
HPA Location Info Nuclear speckles;
Membrane Info Enzymes, Metabolic proteins, Predicted intracellular proteins
Uniport_ID Q02742
HGNC ID HGNC:4203
OMIM ID 600391
Summary This gene is a member of the beta-1,6-N-acetylglucosaminyltransferase gene family. It is essential to the formation of Gal beta 1-3(GlcNAc beta 1-6)GalNAc structures and the core 2 O-glycan branch. The gene coding this enzyme was originally mapped to 9q21, but was later localized to 9q13. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Jul 2008]
Target gene [GCNT1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1020148 chr9 1472 143 47 1662 View

Target gene [GCNT1] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
GSE247322 scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - GCNT1 peak across samples

Peak Plot

> Dataset: GSE68402 - GCNT1 peak across samples

Peak Plot

> Dataset: GSE270130 - GCNT1 peak across samples

Peak Plot

> Dataset: GSE100400 - GCNT1 peak across samples

Peak Plot

> Dataset: GSE131257 - GCNT1 peak across samples

Peak Plot