HTLV1 Target gene Detail Information

> GPC6 Gene Search Result


Gene Information
Gene Name GPC6
Gene ID 10082
Gene Full Name glypican 6
Gene Alias OMIMD1
Transcripts ENSG00000183098
Virus HTLV1
Gene Type protein-coding
HPA Location Info Golgi apparatus, Vesicles;Intracellular and membrane;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins
Uniport_ID Q9Y625
HGNC ID HGNC:4454
OMIM ID 604404
Summary The glypicans comprise a family of glycosylphosphatidylinositol-anchored heparan sulfate proteoglycans, and they have been implicated in the control of cell growth and cell division. The glypican encoded by this gene is a putative cell surface coreceptor for growth factors, extracellular matrix proteins, proteases and anti-proteases. Mutations in this gene are associated with omodysplasia 1. [provided by RefSeq, Nov 2016]
Target gene [GPC6] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6006005 chr13 60 17 0 77 View
6010960 chr13 6 15 7 28 View
6015580 chr13 10 4 0 14 View
6016128 chr13 6 7 0 13 View
6017283 chr13 4 4 3 11 View
6018296 chr13 5 1 3 9 View
6019232 chr13 5 2 1 8 View
6023037 chr13 0 4 0 4 View
6025338 chr13 2 1 0 3 View
6028451 chr13 1 0 0 1 View
6030836 chr13 0 0 0 0 View
6032346 chr13 0 0 0 0 View
6032347 chr13 0 0 0 0 View
6032348 chr13 0 0 0 0 View
6032349 chr13 0 0 0 0 View
6032350 chr13 0 0 0 0 View
6032903 chr13 0 0 0 0 View
6033560 chr13 0 0 0 0 View

Target gene [GPC6] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - GPC6 peak across samples

Peak Plot