Gene Information
|
Gene Name
|
IFT88 |
|
Gene ID
|
8100
|
|
Gene Full Name
|
intraflagellar transport 88 |
|
Gene Alias
|
D13S1056E|DAF19|TG737|TTC10|hTg737 |
|
Transcripts
|
ENSG00000032742
|
|
Virus
|
HTLV1 |
|
Gene Type
|
protein-coding |
|
HPA Location Info
|
Microtubules, Primary cilium, End piece;Cytokinetic bridge, Mitotic spindle, Centriolar satellite, Basal body, Cytosol, Connecting piece, Mid piece, Principal piece; 
|
|
Membrane Info
|
Predicted intracellular proteins, Transporters |
|
Uniport_ID
|
Q13099
|
|
HGNC ID
|
HGNC:20606
|
|
OMIM ID
|
600595 |
|
Summary
|
This gene encodes a member of the tetratrico peptide repeat (TPR) family. The encoded protein is involved in cilium biogenesis. Mutations of a similar gene in mouse can cause polycystic kidney disease. Several transcript variants encoding distinct isoforms have been identified for this gene. [provided by RefSeq, Jul 2017] |
Target gene [IFT88] related to VISs 
Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section
| DVID |
Chromosome |
HM |
TFBS |
CA |
Sum of Overlapped Records |
Detail |
| 6023906 |
chr13 |
4 |
0 |
0 |
4 |
View |
| 6025332 |
chr13 |
3 |
0 |
0 |
3 |
View |
Target gene [IFT88] related to Omics data
| Data ID |
Experiment type |
Sample number |
Platform |
|
GSE189602
|
Methylation profiling (Array) |
4 |
Infinium MethylationEPIC |
|
C GSE94732
|
Chip-seq |
24 |
Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens) |
|
GSE52244
|
Expression array |
15 |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] |
|
GSE10789
|
Expression array |
6 |
NCI/ATC Hs-OperonV3 |
|
GSE224047
|
RNA-seq |
10 |
Illumina NextSeq 500 (Homo sapiens) |
|
GSE168557
|
Expression array |
6 |
Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version) |
|
GSE136189
|
Methylation profiling (Array) |
40 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip |
When the gene can detect a peak in the dataset, a peak plot will be displayed.
> Dataset: GSE94732 - IFT88 peak across samples
|
Peak Plot
|
|
|
HTLV1 Target gene Detail Information
