HTLV1 Target gene Detail Information

> KDM4C Gene Search Result


Gene Information
Gene Name KDM4C
Gene ID 23081
Gene Full Name lysine demethylase 4C
Gene Alias GASC1|JHDM3C|JMJD2C|TDRD14C
Transcripts ENSG00000107077
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;
Membrane Info Enzymes, Plasma proteins, Predicted intracellular proteins
Uniport_ID Q9H3R0
HGNC ID HGNC:17071
OMIM ID 605469
Summary This gene is a member of the Jumonji domain 2 (JMJD2) family. The encoded protein is a trimethylation-specific demethylase, and converts specific trimethylated histone residues to the dimethylated form. This enzymatic action regulates gene expression and chromosome segregation. Chromosomal aberrations and changes in expression of this gene may be found in tumor cells. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2015]
Target gene [KDM4C] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6002042 chr9 268 15 13 296 View
6004417 chr9 113 0 3 116 View
6004418 chr9 113 0 3 116 View
6004502 chr9 111 0 2 113 View
6004503 chr9 111 0 2 113 View
6004505 chr9 111 0 2 113 View
6004508 chr9 111 0 2 113 View
6011068 chr9 23 3 2 28 View
6013009 chr9 9 11 0 20 View
6015439 chr9 0 13 1 14 View
6018496 chr9 5 4 0 9 View
6029585 chr9 1 0 0 1 View

Target gene [KDM4C] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - KDM4C peak across samples

Peak Plot