Gene Information
|
Gene Name
|
LCA5 |
|
Gene ID
|
167691
|
|
Gene Full Name
|
lebercilin LCA5 |
|
Gene Alias
|
C6orf152 |
|
Transcripts
|
ENSG00000135338
|
|
Virus
|
HTLV1 |
|
Gene Type
|
protein-coding |
|
HPA Location Info
|
Primary cilium, Mitochondria, Basal body, Flagellar centriole, Mid piece;Nucleoplasm, Nucleoli; 
|
|
Membrane Info
|
Disease related genes, Human disease related genes, Predicted intracellular proteins |
|
Uniport_ID
|
Q86VQ0
|
|
HGNC ID
|
HGNC:31923
|
|
OMIM ID
|
611408 |
|
Summary
|
This gene encodes a protein that is thought to be involved in centrosomal or ciliary functions. Mutations in this gene cause Leber congenital amaurosis type V. Alternatively spliced transcript variants are described. [provided by RefSeq, Oct 2009] |
Target gene [LCA5] related to VISs 
Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section
| DVID |
Chromosome |
HM |
TFBS |
CA |
Sum of Overlapped Records |
Detail |
| 6003301 |
chr6 |
38 |
126 |
4 |
168 |
View |
| 6009968 |
chr6 |
2 |
32 |
0 |
34 |
View |
Target gene [LCA5] related to Omics data
| Data ID |
Experiment type |
Sample number |
Platform |
|
C GSE94732
|
Chip-seq |
24 |
Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens) |
|
GSE168557
|
Expression array |
6 |
Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version) |
|
GSE52244
|
Expression array |
15 |
[HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version] |
|
GSE189602
|
Methylation profiling (Array) |
4 |
Infinium MethylationEPIC |
|
GSE136189
|
Methylation profiling (Array) |
40 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip |
When the gene can detect a peak in the dataset, a peak plot will be displayed.
> Dataset: GSE94732 - LCA5 peak across samples
|
Peak Plot
|
|
|
HTLV1 Target gene Detail Information
