HTLV1 Target gene Detail Information

> LGSN Gene Search Result


Gene Information
Gene Name LGSN
Gene ID 51557
Gene Full Name lengsin, lens protein with glutamine synthetase domain
Gene Alias GLULD1|LGS
Transcripts ENSG00000146166
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm, Vesicles;
Membrane Info Predicted intracellular proteins
Uniport_ID Q5TDP6
HGNC ID HGNC:21016
OMIM ID 611470
Summary This gene encodes a protein with similarity to the GS I members of the glutamine synthetase superfamily. The encoded protein is referred to as a pseudo-glutamine synthetase because it has no glutamine synthesis activity and may function as a chaperone protein. This protein is localized to the lens and may be associated with cataract disease. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2009]
Target gene [LGSN] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6005617 chr6 82 1 0 83 View
6016211 chr6 2 9 1 12 View
6016224 chr6 2 9 1 12 View
6016237 chr6 2 9 1 12 View
6017551 chr6 10 0 0 10 View
6019284 chr6 2 6 0 8 View
6019436 chr6 5 3 0 8 View

Target gene [LGSN] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - LGSN peak across samples

Peak Plot