HPV Target gene Detail Information

> LINC-ROR Gene Search Result


Gene Information
Gene Name LINC-ROR
Gene ID 100885779
Gene Full Name long intergenic non-protein coding RNA, regulator of reprogramming
Gene Alias ROR|lincRNA-RoR|lincRNA-ST8SIA3
Transcripts ENSG00000258609
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:43773
OMIM ID 615173
lncRNASNP2 ID LINC-ROR
Summary This gene produces a long non-coding RNA that regulates the reprogramming of pluripotent stem cells. This RNA suppresses induction of tumor protein p53 after DNA damage. It is thought to act as a sponge for microRNAs that regulate stem cell factors POU class 5 homeobox 1, Nanog, and SRY-box 2. This RNA may also have a extracellular role in modulating response to hypoxia in hepatocellular cancer cells. Expression of this transcript is associated with tumor progression and epithelial to mesenchymal transition and metastasis. [provided by RefSeq, Dec 2017]
Target gene [LINC-ROR] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005320 chr18 14 3 1 18 View

Target gene [LINC-ROR] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC-ROR peak across samples

Peak Plot