HTLV1 Target gene Detail Information

> LINC00339 Gene Search Result


Gene Information
Gene Name LINC00339
Gene ID 29092
Gene Full Name long intergenic non-protein coding RNA 339
Gene Alias HSPC157|NCRNA00339
Transcripts ENSG00000218510
Virus HTLV1
Gene Type ncRNA
HGNC ID HGNC:25011
Target gene [LINC00339] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6000267 chr1 2107 295 74 2476 View

Target gene [LINC00339] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - LINC00339 peak across samples

Peak Plot