HPV Target gene Detail Information

> LINC00380 Gene Search Result


Gene Information
Gene Name LINC00380
Gene ID 101930747
Gene Full Name long intergenic non-protein coding RNA 380
Gene Alias -
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:42706
Target gene [LINC00380] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5011017 chr13 0 2 0 2 View

Target gene [LINC00380] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC00380 peak across samples

Peak Plot