HPV Target gene Detail Information

> LINC00399 Gene Search Result


Gene Information
Gene Name LINC00399
Gene ID 104326054
Gene Full Name long intergenic non-protein coding RNA 399
Gene Alias TCONS_00021596
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:42728
Target gene [LINC00399] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5011242 chr13 64 16 1 81 View
5011243 chr13 64 21 1 86 View

Target gene [LINC00399] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC00399 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC00399 peak across samples

Peak Plot