HPV Target gene Detail Information

> LINC00486 Gene Search Result


Gene Information
Gene Name LINC00486
Gene ID 285045
Gene Full Name long intergenic non-protein coding RNA 486
Gene Alias -
Transcripts ENSG00000230876
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:42946
lncRNASNP2 ID LINC00486
Target gene [LINC00486] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5000002 chr2 3854 4056 753 8663 View
5000003 chr2 3864 4058 753 8675 View
5000004 chr2 3864 4058 753 8675 View
5000005 chr2 3864 4058 753 8675 View
5000006 chr2 3864 4058 753 8675 View
5000007 chr2 3864 4058 753 8675 View
5000008 chr2 3864 4058 753 8675 View
5000009 chr2 3864 4058 753 8675 View
5000010 chr2 3864 4058 753 8675 View
5000011 chr2 3864 4058 753 8675 View
5000012 chr2 3862 4055 753 8670 View
5000013 chr2 3857 4057 753 8667 View
5000015 chr2 3676 3742 606 8024 View
5000016 chr2 3650 3722 593 7965 View
5000018 chr2 3608 3686 590 7884 View
5000019 chr2 3608 3686 590 7884 View
5000020 chr2 3532 3573 585 7690 View
5000021 chr2 3512 3547 583 7642 View
5000022 chr2 3503 3528 583 7614 View
5000024 chr2 3481 3493 579 7553 View
5000025 chr2 3476 3478 573 7527 View
5000026 chr2 3395 3385 562 7342 View
5000027 chr2 3225 3156 554 6935 View
5000028 chr2 3202 3137 544 6883 View
5000029 chr2 3165 3090 515 6770 View
5000030 chr2 3165 3089 515 6769 View
5002623 chr2 7 2 0 9 View
5006828 chr2 3616 3611 708 7935 View
5009503 chr2 262 228 36 526 View
5009711 chr2 2880 2722 458 6060 View
5009724 chr2 3310 3305 695 7310 View
5009738 chr2 3016 3063 507 6586 View
5009755 chr2 3028 3073 509 6610 View
5009766 chr2 2880 2722 458 6060 View
5009768 chr2 3291 3203 444 6938 View
5009775 chr2 3594 3662 741 7997 View
5009798 chr2 3635 3719 743 8097 View
5011999 chr2 2875 2718 434 6027 View
5014057 chr2 2719 2698 512 5929 View
5014058 chr2 1204 1191 313 2708 View
5015431 chr2 10 2 6 18 View
5017283 chr2 3042 2948 454 6444 View

Target gene [LINC00486] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE55542 Expression array 36 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE55550 Expression array 155 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Probe Name version)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC00486 peak across samples

Peak Plot