HPV Target gene Detail Information

> LINC00993 Gene Search Result


Gene Information
Gene Name LINC00993
Gene ID 101929520
Gene Full Name long intergenic non-protein coding RNA 993
Gene Alias -
Transcripts ENSG00000290801
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:48948
Target gene [LINC00993] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5006190 chr10 7 1 0 8 View
5006714 chr10 0 0 0 0 View
5010635 chr10 4 0 0 4 View
5011718 chr10 0 0 0 0 View

Target gene [LINC00993] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - LINC00993 peak across samples

Peak Plot