HPV Target gene Detail Information

> LINC01036 Gene Search Result


Gene Information
Gene Name LINC01036
Gene ID 104169671
Gene Full Name long intergenic non-protein coding RNA 1036
Gene Alias -
Transcripts ENSG00000230426
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:49024
lncRNASNP2 ID LINC01036
Target gene [LINC01036] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5002086 chr1 5 6 5 16 View

Target gene [LINC01036] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
E
  TCGA_CESC 		DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: TCGA_CESC - LINC01036 expression across samples

Volcano Plot

Bar Plot