HBV Target gene Detail Information

> LINC01122 Gene Search Result


Gene Information
Gene Name LINC01122
Gene ID 400955
Gene Full Name long intergenic non-protein coding RNA 1122
Gene Alias LINC01793
Transcripts ENSG00000233723
Virus HBV
Gene Type ncRNA
HGNC ID HGNC:49267
lncRNASNP2 ID LINC01122
Target gene [LINC01122] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1001711 chr2 46 266 207 519 View
1001730 chr2 41 263 208 512 View
1005447 chr2 25 9 20 54 View
1005889 chr2 24 9 13 46 View
1012476 chr2 2 4 0 6 View
1014715 chr2 0 2 1 3 View
1015747 chr2 0 2 0 2 View
1016981 chr2 0 1 0 1 View
1018093 chr2 0 0 0 0 View
1018555 chr2 0 0 0 0 View
1042492 chr2 3 1 0 4 View

Target gene [LINC01122] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
GSE247322 scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - LINC01122 peak across samples

Peak Plot

> Dataset: GSE68402 - LINC01122 peak across samples

Peak Plot

> Dataset: GSE270130 - LINC01122 peak across samples

Peak Plot

> Dataset: GSE100400 - LINC01122 peak across samples

Peak Plot

> Dataset: GSE131257 - LINC01122 peak across samples

Peak Plot