HPV Target gene Detail Information

> LINC01243 Gene Search Result


Gene Information
Gene Name LINC01243
Gene ID 101929620
Gene Full Name long intergenic non-protein coding RNA 1243
Gene Alias -
Transcripts ENSG00000260720
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:49814
lncRNASNP2 ID LINC01243
Target gene [LINC01243] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5004907 chr9 125 21 6 152 View
5005472 chr9 5 12 0 17 View
5005827 chr9 0 1 0 1 View
5010588 chr9 3 1 0 4 View
5011974 chr9 18 2 5 25 View

Target gene [LINC01243] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC01243 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC01243 peak across samples

Peak Plot