HPV Target gene Detail Information

> LINC01339 Gene Search Result


Gene Information
Gene Name LINC01339
Gene ID 101929495
Gene Full Name long intergenic non-protein coding RNA 1339
Gene Alias -
Transcripts ENSG00000248555
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:50549
lncRNASNP2 ID LINC01339
Target gene [LINC01339] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5010574 chr5 1 2 0 3 View
5011937 chr5 2 0 0 2 View

Target gene [LINC01339] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC01339 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC01339 peak across samples

Peak Plot