HPV Target gene Detail Information

> LINC01340 Gene Search Result


Gene Information
Gene Name LINC01340
Gene ID 102546227
Gene Full Name long intergenic non-protein coding RNA 1340
Gene Alias LINC02234
Transcripts ENSG00000250331
Virus HPV
Gene Type ncRNA
HGNC ID HGNC:50550
Target gene [LINC01340] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5010363 chr5 27 0 0 27 View
5016031 chr5 3 0 0 3 View
5016032 chr5 2 0 0 2 View
5016033 chr5 97 39 6 142 View

Target gene [LINC01340] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - LINC01340 peak across samples

Peak Plot

> Dataset: GSE143026 - LINC01340 peak across samples

Peak Plot