HBV Target gene Detail Information

> LRP1B Gene Search Result


Gene Information
Gene Name LRP1B
Gene ID 53353
Gene Full Name LDL receptor related protein 1B
Gene Alias LRP-1B|LRP-DIT|LRPDIT
Transcripts ENSG00000168702
Virus HBV
Gene Type protein-coding
HPA Location Info Vesicles;
Membrane Info Cancer-related genes, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q9NZR2
HGNC ID HGNC:6693
OMIM ID 608766
Summary This gene encodes a member of the low density lipoprotein (LDL) receptor family. These receptors play a wide variety of roles in normal cell function and development due to their interactions with multiple ligands. Disruption of this gene has been reported in several types of cancer. [provided by RefSeq, Jun 2016]
Target gene [LRP1B] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1005227 chr2 5 21 32 58 View
1005228 chr2 4 22 32 58 View
1005370 chr2 1 30 24 55 View
1006594 chr2 36 0 0 36 View
1006839 chr2 33 0 0 33 View
1012906 chr2 5 1 0 6 View
1014222 chr2 1 0 3 4 View
1014328 chr2 2 0 1 3 View
1023638 chr2 0 1 0 1 View
1042535 chr2 0 1 0 1 View
1042536 chr2 1 1 0 2 View

Target gene [LRP1B] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
GSE247322 scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
E
 
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE100400 - LRP1B expression across samples

Volcano Plot

Bar Plot