HTLV1 Target gene Detail Information

> LRP1B Gene Search Result


Gene Information
Gene Name LRP1B
Gene ID 53353
Gene Full Name LDL receptor related protein 1B
Gene Alias LRP-1B|LRP-DIT|LRPDIT
Transcripts ENSG00000168702
Virus HTLV1
Gene Type protein-coding
HPA Location Info Vesicles;
Membrane Info Cancer-related genes, Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q9NZR2
HGNC ID HGNC:6693
OMIM ID 608766
Summary This gene encodes a member of the low density lipoprotein (LDL) receptor family. These receptors play a wide variety of roles in normal cell function and development due to their interactions with multiple ligands. Disruption of this gene has been reported in several types of cancer. [provided by RefSeq, Jun 2016]
Target gene [LRP1B] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6000532 chr2 13 722 565 1300 View
6003074 chr2 20 137 27 184 View
6005799 chr2 63 17 0 80 View
6006738 chr2 45 12 7 64 View
6009396 chr2 0 35 2 37 View
6011351 chr2 6 20 1 27 View
6014011 chr2 16 1 0 17 View
6016338 chr2 7 3 2 12 View
6019096 chr2 5 3 0 8 View
6019663 chr2 1 5 1 7 View
6019675 chr2 1 5 1 7 View
6019687 chr2 1 5 1 7 View
6019952 chr2 3 3 1 7 View
6020701 chr2 4 2 0 6 View
6022667 chr2 0 1 4 5 View
6025553 chr2 2 0 1 3 View
6026785 chr2 0 2 0 2 View
6028329 chr2 1 0 0 1 View
6028398 chr2 0 1 0 1 View
6028669 chr2 1 0 0 1 View
6028931 chr2 1 0 0 1 View
6028946 chr2 0 1 0 1 View
6029499 chr2 0 1 0 1 View
6029995 chr2 0 1 0 1 View
6030017 chr2 1 0 0 1 View
6031125 chr2 0 0 0 0 View
6031334 chr2 0 0 0 0 View
6032441 chr2 0 0 0 0 View
6033028 chr2 0 0 0 0 View
6033059 chr2 0 0 0 0 View

Target gene [LRP1B] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - LRP1B peak across samples

Peak Plot