HTLV1 Target gene Detail Information

> LRRC4C Gene Search Result


Gene Information
Gene Name LRRC4C
Gene ID 57689
Gene Full Name leucine rich repeat containing 4C
Gene Alias NGL-1|NGL1
Transcripts ENSG00000148948
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q9HCJ2
HGNC ID HGNC:29317
OMIM ID 608817
Summary NGL1 is a specific binding partner for netrin G1 (NTNG1; MIM 608818), which is a member of the netrin family of axon guidance molecules (Lin et al., 2003 [PubMed 14595443]).[supplied by OMIM, Mar 2008]
Target gene [LRRC4C] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6003699 chr11 122 20 4 146 View
6003714 chr11 122 19 4 145 View
6003985 chr11 33 20 80 133 View
6004705 chr11 86 18 3 107 View
6014465 chr11 16 0 0 16 View
6018652 chr11 7 2 0 9 View
6020164 chr11 7 0 0 7 View
6020849 chr11 0 6 0 6 View
6023767 chr11 1 3 0 4 View
6024337 chr11 2 1 0 3 View
6025585 chr11 3 0 0 3 View
6028056 chr11 1 0 0 1 View
6028666 chr11 0 1 0 1 View
6029180 chr11 1 0 0 1 View
6029388 chr11 1 0 0 1 View
6029389 chr11 1 0 0 1 View
6030200 chr11 0 1 0 1 View
6030583 chr11 0 0 0 0 View
6030896 chr11 0 0 0 0 View
6031159 chr11 0 0 0 0 View
6031167 chr11 0 0 0 0 View
6031801 chr11 0 0 0 0 View
6032899 chr11 0 0 0 0 View
6033404 chr11 0 0 0 0 View
6033547 chr11 0 0 0 0 View

Target gene [LRRC4C] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - LRRC4C peak across samples

Peak Plot