HPV Target gene Detail Information

> NCBP3 Gene Search Result


Gene Information
Gene Name NCBP3
Gene ID 55421
Gene Full Name nuclear cap binding subunit 3
Gene Alias C17orf85|ELG|HSA277841
Transcripts ENSG00000074356
Virus HPV
Gene Type protein-coding
HPA Location Info Nuclear speckles;
Membrane Info Predicted intracellular proteins
Uniport_ID Q53F19
HGNC ID HGNC:24612
OMIM ID 616624
Summary Enables RNA 7-methylguanosine cap binding activity and mRNA binding activity. Involved in defense response to virus; mRNA export from nucleus; and snRNA export from nucleus. Located in cytoplasm and nuclear speck. Part of nuclear cap binding activity complex. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [NCBP3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5005598 chr17 7 3 0 10 View

Target gene [NCBP3] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE226620 scRNA-seq 30 HiSeq X Ten (Homo sapiens)
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE197461 scRNA-seq 16 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - NCBP3 peak across samples

Peak Plot

> Dataset: GSE143026 - NCBP3 peak across samples

Peak Plot