HTLV1 Target gene Detail Information

> NELFCD Gene Search Result


Gene Information
Gene Name NELFCD
Gene ID 51497
Gene Full Name negative elongation factor complex member C/D
Gene Alias HSPC130|NELF-C|NELF-D|TH1|TH1L
Transcripts ENSG00000101158
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm, Nuclear bodies;Vesicles, Cytosol;
Membrane Info Predicted intracellular proteins
Uniport_ID Q8IXH7
HGNC ID HGNC:15934
OMIM ID 605297
Summary The NELF complex of proteins interacts with the DSIF protein complex to repress transcriptional elongation by RNA polymerase II. The protein encoded by this gene is an essential part of the NELF complex. Alternative translation initiation site usage results in the formation of two isoforms with different N-termini. [provided by RefSeq, Jul 2008]
Target gene [NELFCD] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6000338 chr20 1887 135 26 2048 View
6011215 chr20 10 6 11 27 View

Target gene [NELFCD] related to Omics data
Data ID Experiment type Sample number Platform
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - NELFCD peak across samples

Peak Plot