HTLV1 Target gene Detail Information

> NRXN3 Gene Search Result


Gene Information
Gene Name NRXN3
Gene ID 9369
Gene Full Name neurexin 3
Gene Alias C14orf60
Transcripts ENSG00000021645
Virus HTLV1
Gene Type protein-coding
HPA Location Info
Membrane Info Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q9HDB5, Q9Y4C0
HGNC ID HGNC:8010
OMIM ID 600567
Summary This gene encodes a member of a family of proteins that function in the nervous system as receptors and cell adhesion molecules. Extensive alternative splicing and the use of alternative promoters results in multiple transcript variants and protein isoforms for this gene, but the full-length nature of many of these variants has not been determined. Transcripts that initiate from an upstream promoter encode alpha isoforms, which contain epidermal growth factor-like (EGF-like) sequences and laminin G domains. Transcripts initiating from the downstream promoter encode beta isoforms, which lack EGF-like sequences. Genetic variation at this locus has been associated with a range of behavioral phenotypes, including alcohol dependence and autism spectrum disorder. [provided by RefSeq, Dec 2012]
Target gene [NRXN3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6003534 chr14 4 66 84 154 View
6007430 chr14 23 11 21 55 View
6007756 chr14 20 11 21 52 View
6010328 chr14 25 7 0 32 View
6012558 chr14 11 4 7 22 View
6013637 chr14 11 0 7 18 View
6015929 chr14 8 1 4 13 View
6016567 chr14 10 1 1 12 View
6017139 chr14 9 1 1 11 View
6017355 chr14 7 4 0 11 View
6017928 chr14 6 2 2 10 View
6019075 chr14 7 1 0 8 View
6025489 chr14 3 0 0 3 View
6025490 chr14 3 0 0 3 View
6026520 chr14 1 1 0 2 View
6027648 chr14 2 0 0 2 View
6028806 chr14 0 1 0 1 View
6028814 chr14 0 1 0 1 View
6029207 chr14 0 1 0 1 View
6030152 chr14 1 0 0 1 View
6030758 chr14 0 0 0 0 View

Target gene [NRXN3] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - NRXN3 peak across samples

Peak Plot