HTLV1 Target gene Detail Information

> PACSIN2 Gene Search Result


Gene Information
Gene Name PACSIN2
Gene ID 11252
Gene Full Name protein kinase C and casein kinase substrate in neurons 2
Gene Alias SDPII
Transcripts ENSG00000100266
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nuclear speckles, Plasma membrane;Vesicles, Primary cilium, Centriolar satellite;
Membrane Info Predicted intracellular proteins
Uniport_ID Q9UNF0
HGNC ID HGNC:8571
OMIM ID 604960
Summary This gene is a member of the protein kinase C and casein kinase substrate in neurons family. The encoded protein is involved in linking the actin cytoskeleton with vesicle formation by regulating tubulin polymerization. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2010]
Target gene [PACSIN2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6001199 chr22 478 50 4 532 View
6004947 chr22 14 64 22 100 View

Target gene [PACSIN2] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - PACSIN2 peak across samples

Peak Plot