HTLV1 Target gene Detail Information

> PCDH7 Gene Search Result


Gene Information
Gene Name PCDH7
Gene ID 5099
Gene Full Name protocadherin 7
Gene Alias BH-Pcdh|BHPCDH|PPP1R120
Transcripts ENSG00000169851
Virus HTLV1
Gene Type protein-coding
HPA Location Info Plasma membrane, Cell Junctions;
Membrane Info Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID O60245
HGNC ID HGNC:8659
OMIM ID 602988
Summary This gene belongs to the protocadherin gene family, a subfamily of the cadherin superfamily. The gene encodes a protein with an extracellular domain containing 7 cadherin repeats. The gene product is an integral membrane protein that is thought to function in cell-cell recognition and adhesion. Alternative splicing yields isoforms with unique cytoplasmic tails. [provided by RefSeq, Jul 2008]
Target gene [PCDH7] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6013090 chr4 15 1 4 20 View
6013874 chr4 0 7 11 18 View
6017125 chr4 10 0 1 11 View
6024805 chr4 3 0 0 3 View
6024900 chr4 0 1 2 3 View
6030280 chr4 0 1 0 1 View
6030624 chr4 0 0 0 0 View
6031972 chr4 0 0 0 0 View

Target gene [PCDH7] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - PCDH7 peak across samples

Peak Plot