HTLV1 Target gene Detail Information

> PDLIM5 Gene Search Result


Gene Information
Gene Name PDLIM5
Gene ID 10611
Gene Full Name PDZ and LIM domain 5
Gene Alias ENH|ENH1|L9|LIM
Transcripts ENSG00000163110
Virus HTLV1
Gene Type protein-coding
HPA Location Info Plasma membrane;Nucleoplasm, Focal adhesion sites;
Membrane Info Plasma proteins, Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q96HC4
HGNC ID HGNC:17468
OMIM ID 605904
Summary This gene encodes a member of a family of proteins that possess a 100-amino acid PDZ domain at the N terminus and one to three LIM domains at the C-terminus. This family member functions as a scaffold protein that tethers protein kinases to the Z-disk in striated muscles. It is thought to function in cardiomyocyte expansion and in restraining postsynaptic growth of excitatory synapses. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Jan 2012]
Target gene [PDLIM5] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004992 chr4 50 46 3 99 View
6009573 chr4 4 12 20 36 View
6026654 chr4 0 1 1 2 View
6028927 chr4 1 0 0 1 View

Target gene [PDLIM5] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - PDLIM5 peak across samples

Peak Plot