HTLV1 Target gene Detail Information

> PDS5B Gene Search Result


Gene Information
Gene Name PDS5B
Gene ID 23047
Gene Full Name PDS5 cohesin associated factor B
Gene Alias APRIN|AS3|CG008
Transcripts ENSG00000083642
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;
Membrane Info Predicted intracellular proteins
Uniport_ID Q9NTI5
HGNC ID HGNC:20418
OMIM ID 605333
Summary This gene encodes a protein that interacts with the conserved protein complex termed cohesin. The cohesin complex holds together sister chromatids and facilitates accurate chromosome segregation during mitosis and meiosis. This protein is also a negative regulator of cell proliferation and may be a tumor-suppressor gene. [provided by RefSeq, Jul 2015]
Target gene [PDS5B] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004336 chr13 61 53 5 119 View
6006648 chr13 65 0 0 65 View
6012868 chr13 18 2 1 21 View
6016322 chr13 1 11 0 12 View
6016803 chr13 11 0 0 11 View
6016832 chr13 11 0 0 11 View
6016833 chr13 11 0 0 11 View
6016854 chr13 11 0 0 11 View
6016863 chr13 11 0 0 11 View

Target gene [PDS5B] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - PDS5B peak across samples

Peak Plot