HTLV1 Target gene Detail Information

> PRDM10 Gene Search Result


Gene Information
Gene Name PRDM10
Gene ID 56980
Gene Full Name PR/SET domain 10
Gene Alias BHD2|PFM7|TRIS
Transcripts ENSG00000170325
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;Nucleoli fibrillar center, Vesicles;
Membrane Info Predicted intracellular proteins, Transcription factors
Uniport_ID Q9NQV6
HGNC ID HGNC:13995
OMIM ID 618319
Summary The protein encoded by this gene is a transcription factor that contains C2H2-type zinc-fingers. It also contains a positive regulatory domain, which has been found in several other zinc-finger transcription factors including those involved in B cell differentiation and tumor suppression. Studies of the mouse counterpart suggest that this protein may be involved in the development of the central nerve system (CNS), as well as in the pathogenesis of neuronal storage disease. Multiple alternatively spliced transcript variants encoding distinct isoforms have been observed. [provided by RefSeq, Jul 2008]
Target gene [PRDM10] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6003236 chr11 131 28 15 174 View
6016129 chr11 10 3 0 13 View
6021292 chr11 6 0 0 6 View

Target gene [PRDM10] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - PRDM10 peak across samples

Peak Plot