HTLV1 Target gene Detail Information

> PRRC2A Gene Search Result


Gene Information
Gene Name PRRC2A
Gene ID 7916
Gene Full Name proline rich coiled-coil 2A
Gene Alias BAT2|D6S51|D6S51E|G2
Transcripts ENSG00000204469
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;Nucleoplasm, Plasma membrane;
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID P48634
HGNC ID HGNC:13918
OMIM ID 142580
Summary A cluster of genes, BAT1-BAT5, has been localized in the vicinity of the genes for TNF alpha and TNF beta. These genes are all within the human major histocompatibility complex class III region. This gene has microsatellite repeats which are associated with the age-at-onset of insulin-dependent diabetes mellitus (IDDM) and possibly thought to be involved with the inflammatory process of pancreatic beta-cell destruction during the development of IDDM. This gene is also a candidate gene for the development of rheumatoid arthritis. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Dec 2010]
Target gene [PRRC2A] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6016371 chr6 12 0 0 12 View

Target gene [PRRC2A] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - PRRC2A peak across samples

Peak Plot