HPV Target gene Detail Information

> PUDP Gene Search Result


Gene Information
Gene Name PUDP
Gene ID 8226
Gene Full Name pseudouridine 5'-phosphatase
Gene Alias DXF68S1E|FAM16AX|GS1|HDHD1|HDHD1A
Transcripts ENSG00000130021
Virus HPV
Gene Type protein-coding
HPA Location Info Nucleoplasm;Cytosol;
Membrane Info Enzymes, Predicted intracellular proteins
Uniport_ID Q08623
HGNC ID HGNC:16818
OMIM ID 306480
Summary This gene encodes a member of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The encoded protein has no known biological function. This gene has a pseudogene on chromosome 1. Multiple alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2010]
Target gene [PUDP] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5007525 chrX 2 3 1 6 View
5010974 chrX 13 1 5 19 View
5013912 chrX 36 25 20 81 View
5013913 chrX 38 1 2 41 View
5013914 chrX 58 23 2 83 View
5013915 chrX 198 239 126 563 View
5013916 chrX 30 10 6 46 View

Target gene [PUDP] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE183048 		Chip-seq 24 Illumina HiSeq 4000 (Homo sapiens)
GSE65858 Expression array 270 Illumina HumanHT-12 V4.0 expression beadchip
GSE181805 Expression array 25 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
GSE138080 Expression array 35 Agilent-014850 Whole Human Genome Microarray 4x44K G4112F (Feature Number version)
GSE140662 Expression array 8 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [transcript (gene) version]
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
GSE51993 Expression array 48 Illumina Human v2 MicroRNA expression beadchip;Illumina HumanHT-12 V4.0 expression beadchip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE183048 - PUDP peak across samples

Peak Plot

> Dataset: GSE143026 - PUDP peak across samples

Peak Plot