HTLV1 Target gene Detail Information

> RAP1GAP2 Gene Search Result


Gene Information
Gene Name RAP1GAP2
Gene ID 23108
Gene Full Name RAP1 GTPase activating protein 2
Gene Alias GARNL4|RAP1GA3
Transcripts ENSG00000132359
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nuclear membrane, Cytosol;Perinuclear theca, Flagellar centriole, Principal piece;
Membrane Info Predicted intracellular proteins
Uniport_ID Q684P5
HGNC ID HGNC:29176
OMIM ID 618714
Summary This gene encodes a GTPase-activating protein that activates the small guanine-nucleotide-binding protein Rap1 in platelets. The protein interacts with synaptotagmin-like protein 1 and Rab27 and regulates secretion of dense granules from platelets at sites of endothelial damage. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2009]
Target gene [RAP1GAP2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6005790 chr17 48 25 6 79 View
6007521 chr17 23 17 14 54 View
6010883 chr17 24 3 2 29 View
6014120 chr17 16 1 0 17 View
6018873 chr17 8 0 0 8 View

Target gene [RAP1GAP2] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - RAP1GAP2 peak across samples

Peak Plot