HTLV1 Target gene Detail Information

> RBFOX1 Gene Search Result


Gene Information
Gene Name RBFOX1
Gene ID 54715
Gene Full Name RNA binding fox-1 homolog 1
Gene Alias 2BP1|A2BP1|FOX-1|FOX1|HRNBP1
Transcripts ENSG00000078328
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;Nucleoli fibrillar center, Golgi apparatus, Cytosol;
Membrane Info Predicted intracellular proteins
Uniport_ID Q9NWB1
HGNC ID HGNC:18222
OMIM ID 605104
Summary The Fox-1 family of RNA-binding proteins is evolutionarily conserved, and regulates tissue-specific alternative splicing in metazoa. Fox-1 recognizes a (U)GCAUG stretch in regulated exons or in flanking introns. The protein binds to the C-terminus of ataxin-2 and may contribute to the restricted pathology of spinocerebellar ataxia type 2 (SCA2). Ataxin-2 is the product of the SCA2 gene which causes familial neurodegenerative diseases. Fox-1 and ataxin-2 are both localized in the trans-Golgi network. Several alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Nov 2011]
Target gene [RBFOX1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6006026 chr16 27 10 39 76 View
6009562 chr16 33 3 0 36 View
6010947 chr16 27 1 0 28 View
6010982 chr16 3 21 4 28 View
6015816 chr16 10 3 0 13 View
6016675 chr16 8 4 0 12 View
6016891 chr16 0 4 7 11 View
6018300 chr16 9 0 0 9 View
6018514 chr16 0 1 8 9 View
6020533 chr16 5 2 0 7 View
6021155 chr16 6 0 0 6 View
6022442 chr16 5 0 0 5 View
6024157 chr16 2 0 2 4 View
6024635 chr16 3 0 0 3 View
6024762 chr16 0 1 2 3 View
6025095 chr16 1 2 0 3 View
6027059 chr16 1 1 0 2 View
6027224 chr16 2 0 0 2 View
6028062 chr16 1 0 0 1 View
6029064 chr16 1 0 0 1 View
6029219 chr16 1 0 0 1 View
6029220 chr16 1 0 0 1 View
6031138 chr16 0 0 0 0 View
6031576 chr16 0 0 0 0 View
6031581 chr16 0 0 0 0 View
6032603 chr16 0 0 0 0 View

Target gene [RBFOX1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - RBFOX1 peak across samples

Peak Plot