HPV Target gene Detail Information

> RNF103-CHMP3 Gene Search Result


Gene Information
Gene Name RNF103-CHMP3
Gene ID 100526767
Gene Full Name RNF103-CHMP3 readthrough
Gene Alias CGI149|CHMP3|NEDF|RNF103-VPS24|VPS24|hVps24
Transcripts ENSG00000249884
Virus HPV
Gene Type protein-coding
HPA Location Info
Membrane Info Predicted intracellular proteins
HGNC ID HGNC:38847
Summary This locus represents naturally occurring read-through transcription between the neighboring RNF103 (ring finger protein 103) and CHMP3 (charged multivesicular body protein 3) genes. The read-through transcript encodes a fusion protein that shares sequence identity with each individual gene product. [provided by RefSeq, Oct 2011]
Target gene [RNF103-CHMP3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
5007807 chr2 14 16 13 43 View
5011231 chr2 15 7 9 31 View
5011232 chr2 4 1 0 5 View

Target gene [RNF103-CHMP3] related to Omics data
Data ID Experiment type Sample number Platform
GSE169622 Methylation profiling (Array) 9 Infinium MethylationEPIC
GSE196215 RNA-seq 8 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_CESC DNA methylation sequencing;RNA-seq 288 TCGA
C
  GSE143026 		ATAC-seq;Chip-seq;RNA-seq 30 Illumina HiSeq 2500 (Homo sapiens)
GSE165883 RNA-seq 20 Illumina NextSeq 500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE143026 - RNF103-CHMP3 peak across samples

Peak Plot