HBV Target gene Detail Information

> RNF19B Gene Search Result


Gene Information
Gene Name RNF19B
Gene ID 127544
Gene Full Name ring finger protein 19B
Gene Alias IBRDC3|NKLAM
Transcripts ENSG00000116514
Virus HBV
Gene Type protein-coding
HPA Location Info Cytosol;
Membrane Info Enzymes, Metabolic proteins, Predicted membrane proteins
Uniport_ID Q6ZMZ0
HGNC ID HGNC:26886
OMIM ID 610872
Summary This gene encodes a multi-pass membrane protein containing two RING-type and one IBR-type zinc finger motifs. The encoded protin is an E3 ubiquitin-protein ligase that plays a role in the cytotoxic effects of natural killer (NK) cells. Alternative splicing results in multiple transcript variants. There are pseudogenes for this gene on chromosomes X and Y in a possible pseudoautosomal region. [provided by RefSeq, Jul 2014]
Target gene [RNF19B] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
1007935 chr1 21 1 1 23 View
1038904 chr1 112 60 9 181 View
1038905 chr1 111 60 9 180 View

Target gene [RNF19B] related to Omics data
Data ID Experiment type Sample number Platform
GSE236281 RNA-seq 12 Illumina MiSeq (Homo sapiens)
C
  GSE35465 		Chip-seq;RNA-seq 6 Illumina HiSeq 2000 (Homo sapiens)
C
  GSE68402 		Chip-seq 26 Illumina MiSeq (Homo sapiens);Illumina HiSeq 2500 (Homo sapiens)
GSE247322 scRNA-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
TCGA_LIHC_HBV DNA methylation sequencing;RNA-seq 97 TCGA
C
  GSE270130 		Chip-seq 27 Illumina NovaSeq 6000 (Homo sapiens)
GSE224901 RNA-seq 21 Illumina NovaSeq 6000 (Homo sapiens)
C
  GSE100400 		Chip-seq;RNA-seq;4C_cccDNA 31 Illumina NextSeq 500 (Homo sapiens);Illumina NextSeq 500 (Mus musculus)
GSE173897 RNA-seq 95 Illumina HiSeq 4000 (Homo sapiens)
GSE262515 RNA-seq 21 Illumina HiSeq 2500 (Homo sapiens);Illumina HiSeq 2500 (Mus musculus)
GSE110345 RNA-seq 4 Illumina HiSeq 2500 (Homo sapiens)
C
  GSE131257 		ATAC-seq;RNA-seq 19 Illumina HiSeq 2500 (Homo sapiens)
GSE94660 RNA-seq 42 Illumina HiSeq 2500 (Homo sapiens)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE35465 - RNF19B peak across samples

Peak Plot

> Dataset: GSE68402 - RNF19B peak across samples

Peak Plot

> Dataset: GSE270130 - RNF19B peak across samples

Peak Plot

> Dataset: GSE100400 - RNF19B peak across samples

Peak Plot

> Dataset: GSE131257 - RNF19B peak across samples

Peak Plot