HTLV1 Target gene Detail Information

> ROBO1 Gene Search Result


Gene Information
Gene Name ROBO1
Gene ID 6091
Gene Full Name roundabout guidance receptor 1
Gene Alias CPHD8|DUTT1|NORS|NYS8|SAX3
Transcripts ENSG00000169855
Virus HTLV1
Gene Type protein-coding
HPA Location Info Plasma membrane;Primary cilium;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q9Y6N7
HGNC ID HGNC:10249
OMIM ID 602430
Summary Bilateral symmetric nervous systems have special midline structures that establish a partition between the two mirror image halves. Some axons project toward and across the midline in response to long-range chemoattractants emanating from the midline. The product of this gene is a member of the immunoglobulin gene superfamily and encodes an integral membrane protein that functions in axon guidance and neuronal precursor cell migration. This receptor is activated by SLIT-family proteins, resulting in a repulsive effect on glioma cell guidance in the developing brain. A related gene is located at an adjacent region on chromosome 3. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2009]
Target gene [ROBO1] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004424 chr3 76 25 15 116 View
6010353 chr3 5 26 0 31 View
6012498 chr3 21 1 0 22 View
6016639 chr3 12 0 0 12 View
6017164 chr3 2 5 4 11 View
6018205 chr3 4 3 2 9 View
6021761 chr3 4 1 0 5 View
6026266 chr3 1 0 1 2 View
6026436 chr3 2 0 0 2 View
6026587 chr3 0 2 0 2 View
6028254 chr3 0 1 0 1 View
6028644 chr3 1 0 0 1 View
6028867 chr3 0 0 1 1 View
6029698 chr3 0 1 0 1 View
6029699 chr3 0 1 0 1 View
6029891 chr3 0 1 0 1 View
6030023 chr3 1 0 0 1 View
6031854 chr3 0 0 0 0 View
6033367 chr3 0 0 0 0 View

Target gene [ROBO1] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - ROBO1 peak across samples

Peak Plot