HTLV1 Target gene Detail Information

> SAMD4A Gene Search Result


Gene Information
Gene Name SAMD4A
Gene ID 23034
Gene Full Name sterile alpha motif domain containing 4A
Gene Alias SAMD4|SMAUG|SMAUG1|SMG|SMGA
Transcripts ENSG00000020577
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cell Junctions;Cytosol;
Membrane Info Predicted intracellular proteins
Uniport_ID Q9UPU9
HGNC ID HGNC:23023
OMIM ID 610747
Summary Sterile alpha motifs (SAMs) in proteins such as SAMD4A are part of an RNA-binding domain that functions as a posttranscriptional regulator by binding to an RNA sequence motif known as the Smaug recognition element, which was named after the Drosophila Smaug protein (Baez and Boccaccio, 2005 [PubMed 16221671]).[supplied by OMIM, Mar 2008]
Target gene [SAMD4A] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6002068 chr14 286 2 3 291 View
6011405 chr14 21 4 1 26 View
6012695 chr14 9 1 11 21 View
6014680 chr14 16 0 0 16 View
6014933 chr14 14 1 0 15 View
6015341 chr14 6 5 3 14 View
6026676 chr14 2 0 0 2 View

Target gene [SAMD4A] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SAMD4A peak across samples

Peak Plot