HTLV1 Target gene Detail Information

> SBF2 Gene Search Result


Gene Information
Gene Name SBF2
Gene ID 81846
Gene Full Name SET binding factor 2
Gene Alias CMT4B2|DENND7B|MTMR13
Transcripts ENSG00000133812
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;Intermediate filaments, Cytosol;
Membrane Info Disease related genes, Human disease related genes, Predicted intracellular proteins
Uniport_ID Q86WG5
HGNC ID HGNC:2135
OMIM ID 607697
Summary This gene encodes a pseudophosphatase and member of the myotubularin-related protein family. This gene maps within the CMT4B2 candidate region of chromosome 11p15 and mutations in this gene have been associated with Charcot-Marie-Tooth Disease, type 4B2. [provided by RefSeq, Jul 2008]
Target gene [SBF2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6009833 chr11 30 1 3 34 View
6012376 chr11 17 6 0 23 View
6026404 chr11 0 2 0 2 View
6026744 chr11 2 0 0 2 View
6029394 chr11 0 1 0 1 View

Target gene [SBF2] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SBF2 peak across samples

Peak Plot