HTLV1 Target gene Detail Information

> SCGN Gene Search Result


Gene Information
Gene Name SCGN
Gene ID 10590
Gene Full Name secretagogin, EF-hand calcium binding protein
Gene Alias CALBL|DJ501N12.8|SECRET|SEGN|setagin
Transcripts ENSG00000079689
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cytosol;Intracellular and membrane;
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID O76038
HGNC ID HGNC:16941
OMIM ID 609202
Summary The encoded protein is a secreted calcium-binding protein which is found in the cytoplasm. It is related to calbindin D-28K and calretinin. This protein is thought to be involved in KCL-stimulated calcium flux and cell proliferation. [provided by RefSeq, Jul 2008]
Target gene [SCGN] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6020329 chr6 0 3 4 7 View

Target gene [SCGN] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SCGN peak across samples

Peak Plot