HTLV1 Target gene Detail Information

> SCN10A Gene Search Result


Gene Information
Gene Name SCN10A
Gene ID 6336
Gene Full Name sodium voltage-gated channel alpha subunit 10
Gene Alias FEPS2|Nav1.8|PN3|SNS
Transcripts ENSG00000185313
Virus HTLV1
Gene Type protein-coding
HPA Location Info Connecting piece, Flagellar centriole;
Membrane Info Disease related genes, FDA approved drug targets, Human disease related genes, Plasma proteins, Predicted membrane proteins, Voltage-gated ion channels
Uniport_ID Q9Y5Y9
HGNC ID HGNC:10582
OMIM ID 604427
Summary The protein encoded by this gene is a tetrodotoxin-resistant voltage-gated sodium channel alpha subunit. The properties of the channel formed by the encoded transmembrane protein can be altered by interaction with different beta subunits. This protein may be involved in the onset of pain associated with peripheral neuropathy. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jun 2014]
Target gene [SCN10A] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6007054 chr3 56 3 1 60 View
6027282 chr3 1 1 0 2 View

Target gene [SCN10A] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
M
  GSE136189
Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the query gene is differentially changed in the dataset, a volcano/bar plot will be displayed.


> Dataset: GSE94732 - SCN10A peak across samples

Peak Plot