HTLV1 Target gene Detail Information

> SEMA3E Gene Search Result


Gene Information
Gene Name SEMA3E
Gene ID 9723
Gene Full Name semaphorin 3E
Gene Alias M-SEMAH|M-SemaK|SEMAH|coll-5
Transcripts ENSG00000170381
Virus HTLV1
Gene Type protein-coding
HPA Location Info Vesicles;Nucleoplasm;Secreted in other tissues;
Membrane Info Human disease related genes, Predicted secreted proteins
Uniport_ID O15041
HGNC ID HGNC:10727
OMIM ID 608166
Summary Semaphorins are a large family of conserved secreted and membrane associated proteins which possess a semaphorin (Sema) domain and a PSI domain (found in plexins, semaphorins and integrins) in the N-terminal extracellular portion. Based on sequence and structural similarities, semaphorins are put into eight classes: invertebrates contain classes 1 and 2, viruses have class V, and vertebrates contain classes 3-7. Semaphorins serve as axon guidance ligands via multimeric receptor complexes, some (if not all) containing plexin proteins. This gene encodes a class 4 semaphorin. This gene encodes a class 3 semaphorin. Multiple transcript variants encoding different isoforms have been found for this gene.[provided by RefSeq, May 2010]
Target gene [SEMA3E] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6009757 chr7 26 1 8 35 View
6021878 chr7 1 4 0 5 View
6030537 chr7 0 0 0 0 View
6030571 chr7 0 0 0 0 View
6030636 chr7 0 0 0 0 View

Target gene [SEMA3E] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SEMA3E peak across samples

Peak Plot