HTLV1 Target gene Detail Information

> SFSWAP Gene Search Result


Gene Information
Gene Name SFSWAP
Gene ID 6433
Gene Full Name splicing factor SWAP
Gene Alias SFRS8|SWAP
Transcripts ENSG00000061936
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm;Plasma membrane, Cytosol;
Membrane Info Plasma proteins, Predicted intracellular proteins
Uniport_ID Q12872
HGNC ID HGNC:10790
OMIM ID 601945
Summary This gene encodes a human homolog of Drosophila splicing regulatory protein. This gene autoregulates its expression by control of splicing of its first two introns. In addition, it also regulates the splicing of fibronectin and CD45 genes. Two transcript variants encoding different isoforms have been identified. [provided by RefSeq, May 2012]
Target gene [SFSWAP] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6002950 chr12 141 36 19 196 View
6013569 chr12 17 2 0 19 View

Target gene [SFSWAP] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732
Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SFSWAP peak across samples

Peak Plot