HTLV1 Target gene Detail Information

> SGCZ Gene Search Result


Gene Information
Gene Name SGCZ
Gene ID 137868
Gene Full Name sarcoglycan zeta
Gene Alias ZSG1
Transcripts ENSG00000185053
Virus HTLV1
Gene Type protein-coding
HPA Location Info
Membrane Info Predicted membrane proteins
Uniport_ID Q96LD1
HGNC ID HGNC:14075
OMIM ID 608113
Summary The zeta-sarcoglycan gene measures over 465 kb and localizes to 8p22. This protein is part of the sarcoglycan complex, a group of 6 proteins. The sarcoglycans are all N-glycosylated transmembrane proteins with a short intra-cellular domain, a single transmembrane region and a large extra-cellular domain containing a carboxyl-terminal cluster with several conserved cysteine residues. The sarcoglycan complex is part of the dystrophin-associated glycoprotein complex (DGC), which bridges the inner cytoskeleton and the extra-cellular matrix. [provided by RefSeq, Jul 2008]
Target gene [SGCZ] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6021365 chr8 6 0 0 6 View
6022919 chr8 4 0 0 4 View
6027331 chr8 1 0 1 2 View
6027560 chr8 1 1 0 2 View
6030068 chr8 0 1 0 1 View
6032515 chr8 0 0 0 0 View
6032516 chr8 0 0 0 0 View
6032517 chr8 0 0 0 0 View
6032981 chr8 0 0 0 0 View
6033460 chr8 0 0 0 0 View

Target gene [SGCZ] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SGCZ peak across samples

Peak Plot