HTLV1 Target gene Detail Information

> SLC4A4 Gene Search Result


Gene Information
Gene Name SLC4A4
Gene ID 8671
Gene Full Name solute carrier family 4 member 4
Gene Alias HNBC1|KNBC|NBC1|NBC2|NBCe1|NBCe1-A|PRTAO|SLC4A5|hhNMC|kNBC1|pNBC
Transcripts ENSG00000080493
Virus HTLV1
Gene Type protein-coding
HPA Location Info Plasma membrane;Cytosol;
Membrane Info Disease related genes, Human disease related genes, Metabolic proteins, Potential drug targets, Predicted intracellular proteins, Predicted membrane proteins, Transporters
Uniport_ID Q9Y6R1
HGNC ID HGNC:11030
OMIM ID 603345
Summary This gene encodes a sodium bicarbonate cotransporter (NBC) involved in the regulation of bicarbonate secretion and absorption and intracellular pH. Mutations in this gene are associated with proximal renal tubular acidosis. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2008]
Target gene [SLC4A4] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004975 chr4 15 79 5 99 View
6006891 chr4 15 18 29 62 View
6011634 chr4 18 2 6 26 View
6012407 chr4 1 21 0 22 View
6014864 chr4 10 5 0 15 View
6020059 chr4 3 4 0 7 View
6024543 chr4 3 0 0 3 View
6028568 chr4 1 0 0 1 View
6032210 chr4 0 0 0 0 View

Target gene [SLC4A4] related to Omics data
Data ID Experiment type Sample number Platform
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SLC4A4 peak across samples

Peak Plot