HTLV1 Target gene Detail Information

> SLF2 Gene Search Result


Gene Information
Gene Name SLF2
Gene ID 55719
Gene Full Name SMC5-SMC6 complex localization factor 2
Gene Alias ATELS1|C10orf6|FAM178A
Transcripts ENSG00000119906
Virus HTLV1
Gene Type protein-coding
HPA Location Info Nucleoplasm, Vesicles;
Membrane Info Predicted intracellular proteins, Predicted membrane proteins
Uniport_ID Q8IX21
HGNC ID HGNC:17814
OMIM ID 610348
Summary Enables ubiquitin protein ligase binding activity. Involved in several processes, including positive regulation of cellular component organization; positive regulation of double-strand break repair; and protein localization to site of double-strand break. Located in PML body; chromatin; and site of double-strand break. Implicated in mosaic variegated aneuploidy syndrome. [provided by Alliance of Genome Resources, Apr 2025]
Target gene [SLF2] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6002414 chr10 188 50 6 244 View
6005717 chr10 70 12 0 82 View

Target gene [SLF2] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE10789 Expression array 6 NCI/ATC Hs-OperonV3
GSE224047 RNA-seq 10 Illumina NextSeq 500 (Homo sapiens)
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SLF2 peak across samples

Peak Plot