HTLV1 Target gene Detail Information

> SLIT3 Gene Search Result


Gene Information
Gene Name SLIT3
Gene ID 6586
Gene Full Name slit guidance ligand 3
Gene Alias MEGF5|SLIL2|SLIT1|Slit-3|slit2
Transcripts ENSG00000184347
Virus HTLV1
Gene Type protein-coding
HPA Location Info Cell Junctions;Secreted in other tissues;
Membrane Info Predicted intracellular proteins, Predicted secreted proteins
Uniport_ID O75094
HGNC ID HGNC:11087
OMIM ID 603745
Summary The protein encoded by this gene is secreted, likely interacting with roundabout homolog receptors to effect cell migration. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2012]
Target gene [SLIT3] related to VISs

Integration Table: if previous studies reported that target gene was altered by virus integration events, the overlap between VISs in this literature and Cistrome factors was listed in this section


DVID Chromosome HM TFBS CA Sum of Overlapped Records Detail
6004201 chr5 71 36 18 125 View
6009363 chr5 21 1 15 37 View
6019540 chr5 6 2 0 8 View
6023855 chr5 3 1 0 4 View

Target gene [SLIT3] related to Omics data
Data ID Experiment type Sample number Platform
C
  GSE94732 		Chip-seq 24 Illumina NextSeq 500 (Homo sapiens);illumina Genome Analyzer IIx (Homo sapiens)
GSE168557 Expression array 6 Agilent-039494 SurePrint G3 Human GE v2 8x60K Microarray 039381 (Feature Number version)
GSE52244 Expression array 15 [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [probe set (exon) version]
GSE189602 Methylation profiling (Array) 4 Infinium MethylationEPIC
GSE136189 Methylation profiling (Array) 40 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482);Illumina Infinium HumanMethylation850 BeadChip


When the gene can detect a peak in the dataset, a peak plot will be displayed.


> Dataset: GSE94732 - SLIT3 peak across samples

Peak Plot